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GenBank Identifier | RefSeq Acc. | Name |
48843534 | NC_005905.1 | Neodiprion sertifer nucleopolyhedrovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28300 | + | 5531 | 90 | 23.5 | -21.1 | YP_025114 | 5' arm 3' arm | ||
28301 | + | 19504 | 86 | 27.5 | -23.8 | 5' arm 3' arm | |||
28302 | + | 19635 | 89 | 25.5 | -29.2 | 5' arm 3' arm | |||
28303 | + | 19800 | 89 | 23.5 | -20.2 | 5' arm 3' arm | |||
28304 | + | 19920 | 89 | 24 | -23 | 5' arm 3' arm | |||
28305 | + | 20038 | 89 | 25.5 | -21.9 | 5' arm 3' arm | |||
28306 | + | 27325 | 87 | 24 | -21.7 | 5' arm 3' arm | |||
28307 | + | 49018 | 89 | 28.5 | -26 | 5' arm 3' arm | |||
28308 | + | 49108 | 89 | 28.5 | -25.7 | 5' arm 3' arm | |||
28309 | + | 49198 | 89 | 28.5 | -29 | 5' arm 3' arm | |||
28310 | + | 49288 | 89 | 28.5 | -30.9 | 5' arm 3' arm | |||
28311 | + | 49378 | 88 | 25.5 | -20.4 | 5' arm 3' arm | |||
28312 | - | 8716 | 89 | 25.5 | -21.4 | 5' arm 3' arm | |||
28313 | - | 11168 | 90 | 27 | -22.8 | 5' arm 3' arm | |||
28314 | - | 11298 | 90 | 27 | -22.8 | 5' arm 3' arm | |||
28315 | - | 11428 | 90 | 27 | -22.8 | 5' arm 3' arm | |||
28316 | - | 11558 | 90 | 27 | -22.8 | 5' arm 3' arm | |||
28317 | - | 11688 | 90 | 27 | -22.8 | 5' arm 3' arm | |||
28318 | - | 11818 | 90 | 27 | -22.8 | 5' arm 3' arm | |||
28319 | - | 17188 | 89 | 25.5 | -27.1 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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