miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628082 NC_001652.1 Infectious hematopoietic necrosis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4066 + 2652 85 19.5 -23.9 NP_042678 5' arm      3' arm
4065 + 758 90 20 -21.2 NP_042676 5' arm      3' arm
4069 - 9757 90 21.5 -22.7 NP_042681 5' arm      3' arm
4067 - 846 88 21.5 -28 NP_042676 5' arm      3' arm
4070 - 10256 90 22 -19.8 NP_042681 5' arm      3' arm
4071 - 10649 88 23 -20.3 NP_042681 5' arm      3' arm
4068 - 4082 89 23.5 -27.7 NP_042679 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.