miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
48429536 NC_011450.1 Foot-and-mouth disease virus A

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
33654 + 224 87 20 -23.7 5' arm      3' arm
33655 + 612 76 20 -24.6 5' arm      3' arm
33656 + 1372 89 20.5 -25.8 YP_024315 5' arm      3' arm
33657 + 2210 89 21.5 -22.9 YP_024315 5' arm      3' arm
33658 + 2520 85 20.5 -29.2 YP_024315 5' arm      3' arm
33659 + 3408 90 22 -22.1 YP_024315 5' arm      3' arm
33660 + 3861 90 21.5 -22.2 YP_024315 5' arm      3' arm
33661 + 4108 88 19.5 -27 YP_024315 5' arm      3' arm
33662 + 4657 87 19 -24.4 YP_024315 5' arm      3' arm
33663 - 2696 89 25 -24.02 YP_024315 5' arm      3' arm
33664 - 3322 90 22 -28.4 YP_024315 5' arm      3' arm
33665 - 3558 90 21 -24.4 YP_024315 5' arm      3' arm
33666 - 3648 89 24 -25.1 YP_024315 5' arm      3' arm
33667 - 4175 85 19 -24.9 YP_024315 5' arm      3' arm
33668 - 5874 86 23 -28.8 YP_024315 5' arm      3' arm
33669 - 6311 83 19 -26.8 YP_024315 5' arm      3' arm
33670 - 7048 90 19.5 -31.2 YP_024315 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.