miRNA display CGI


Results 1 - 20 of 29 are showing below:
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GenBank Identifier RefSeq Acc. Name
20564151 NC_003839.1 Tomato ringspot virus RNA 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15251 + 129 89 20 -26.3 NP_620762 5' arm      3' arm
15252 + 324 90 21 -29.3 NP_620762 5' arm      3' arm
15253 + 1188 89 21 -24.3 NP_620762 5' arm      3' arm
15254 + 2257 88 21.5 -21.7 NP_620762 5' arm      3' arm
15255 + 2391 86 20.5 -21.6 NP_620762 5' arm      3' arm
15256 + 3861 90 25 -21.2 NP_620762 5' arm      3' arm
15257 + 4350 89 22.5 -31.3 NP_620762 5' arm      3' arm
15258 - 293 89 20.5 -22.1 NP_620762 5' arm      3' arm
15259 - 612 84 19.5 -25.7 NP_620762 5' arm      3' arm
15260 - 738 86 20.5 -32.7 NP_620762 5' arm      3' arm
15261 - 2999 90 27 -30.9 NP_620762 5' arm      3' arm
15262 - 3167 86 20 -19.8 NP_620762 5' arm      3' arm
15263 + 129 89 20 -26.3 NP_620765 5' arm      3' arm
15264 + 324 90 21 -29.3 NP_620765 5' arm      3' arm
15265 + 606 90 23 -35.6 NP_620765 5' arm      3' arm
15266 + 919 86 20 -20.9 NP_620765 5' arm      3' arm
15267 + 1582 89 20 -28.4 NP_620765 5' arm      3' arm
15268 + 1916 90 22 -20.4 NP_620765 5' arm      3' arm
15269 + 2399 89 22 -22.21 NP_620765 5' arm      3' arm
15270 + 3010 87 28 -32.1 NP_620765 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.