miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20522117 NC_003805.1 Tobacco rattle virus RNA 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15218 + 1662 87 20 -22.5 NP_620669 5' arm      3' arm
15219 + 4524 88 23.5 -21.7 NP_620669 5' arm      3' arm
15220 + 4622 87 22 -25.7 NP_620669 5' arm      3' arm
15221 + 6154 88 24.5 -20.7 NP_620672 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.