miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
24323599 NC_004346.1 Subterranean clover mottle virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17219 + 714 89 21.5 -24.3 NP_715628 5' arm      3' arm
17220 + 1833 90 22 -24.5 NP_715628 5' arm      3' arm
17221 + 3958 89 19.5 -25.1 NP_715629 5' arm      3' arm
17222 - 2226 89 26 -19.7 NP_715627 5' arm      3' arm
17223 - 3436 87 24.5 -22.2 NP_715629 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.