miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2224	+	5987	88	23	-25.5	NP_040516		5' arm      3' arm
2226	+	6597	86	22.5	-28.2	NP_040516		5' arm      3' arm
2229	+	8658	90	21.5	-19.8	NP_040518		5' arm      3' arm
2227	+	7591	85	20.5	-23.5	NP_040516		5' arm      3' arm
2225	+	6445	87	20	-20.2	NP_040516		5' arm      3' arm
2228	+	8334	90	20	-28.2	NP_040517		5' arm      3' arm
2270	-	26284	89	22.5	-26.2	NP_040529		5' arm      3' arm
2271	-	26441	89	20.5	-26.6	NP_040529		5' arm      3' arm
2269	-	25306	89	20.5	-24.1	NP_040528		5' arm      3' arm
2266	-	23559	88	20.5	-22	NP_040527		5' arm      3' arm
2268	-	24722	90	20	-32.7	NP_040528		5' arm      3' arm
2265	-	23121	88	19.5	-21.7	NP_040527		5' arm      3' arm
2267	-	24138	89	25.5	-24.8			5' arm      3' arm
2274	-	27515	90	19.5	-20.2	NP_040530		5' arm      3' arm
2272	-	26624	90	24	-25			5' arm      3' arm
2273	-	26806	90	24.5	-24.3			5' arm      3' arm
2277	-	34565	89	19.5	-28.5	NP_040534		5' arm      3' arm
2278	-	35294	84	20	-20.1	NP_597756		5' arm      3' arm
2275	-	33712	87	22	-19.8	NP_597755		5' arm      3' arm
2243	-	2179	87	21	-30.6	NP_040512		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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