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| GenBank Identifier | RefSeq Acc. | Name |
| 46852402 | NC_005869.1 | Porcine adenovirus A |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 27477 | - | 29754 | 90 | 21.5 | -19.4 | YP_009220 | 5' arm 3' arm | ||
| 27478 | - | 30478 | 90 | 21.5 | -19.4 | YP_009220 | 5' arm 3' arm | ||
| 27480 | - | 31822 | 90 | 22.5 | -19.6 | YP_009221 | 5' arm 3' arm | ||
| 27467 | - | 25318 | 90 | 21.5 | -19.7 | YP_009213 | 5' arm 3' arm | ||
| 27423 | + | 11247 | 89 | 20 | -19.8 | YP_009203 | 5' arm 3' arm | ||
| 27428 | + | 14129 | 90 | 19.5 | -19.8 | YP_009205 | 5' arm 3' arm | ||
| 27405 | + | 1342 | 80 | 24 | -19.8 | 5' arm 3' arm | |||
| 27406 | + | 2380 | 86 | 19.5 | -19.8 | YP_009198 | 5' arm 3' arm | ||
| 27421 | + | 9513 | 89 | 20.5 | -19.9 | YP_009202 | 5' arm 3' arm | ||
| 27458 | - | 21582 | 89 | 21.5 | -19.9 | YP_009210 | 5' arm 3' arm | ||
| 27415 | + | 6140 | 89 | 20.5 | -20 | YP_009201 | 5' arm 3' arm | ||
| 27470 | - | 26575 | 90 | 20.5 | -20.1 | YP_009213 | 5' arm 3' arm | ||
| 27471 | - | 26887 | 90 | 20.5 | -20.3 | YP_009215 | 5' arm 3' arm | ||
| 27436 | + | 24169 | 90 | 19.5 | -20.3 | YP_009213 | 5' arm 3' arm | ||
| 27410 | + | 4560 | 89 | 23 | -20.8 | YP_009200 | 5' arm 3' arm | ||
| 27430 | + | 22320 | 82 | 19 | -20.8 | YP_009211 | 5' arm 3' arm | ||
| 27432 | + | 22909 | 90 | 21.5 | -21.1 | YP_009212 | 5' arm 3' arm | ||
| 27404 | + | 723 | 87 | 19 | -21.4 | YP_009196 | 5' arm 3' arm | ||
| 27417 | + | 7308 | 90 | 19 | -21.41 | YP_009201 | 5' arm 3' arm | ||
| 27469 | - | 25915 | 90 | 21 | -21.5 | YP_009213 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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