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GenBank Identifier | RefSeq Acc. | Name |
13487858 | NC_002702.1 | Porcine adenovirus C |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
10635 | + | 12748 | 86 | 20 | -22.4 | NP_108662 | 5' arm 3' arm | ||
10647 | - | 10761 | 88 | 21.5 | -24.8 | NP_108661 | 5' arm 3' arm | ||
10633 | + | 12029 | 89 | 20 | -21.8 | NP_108661 | 5' arm 3' arm | ||
10632 | + | 10674 | 88 | 29 | -23.1 | NP_108661 | 5' arm 3' arm | ||
10631 | + | 10254 | 76 | 19.5 | -24.2 | NP_108660 | 5' arm 3' arm | ||
10630 | + | 9549 | 89 | 20 | -21.9 | NP_108660 | 5' arm 3' arm | ||
10628 | + | 8249 | 89 | 19 | -23.8 | NP_108659 | 5' arm 3' arm | ||
10646 | - | 8486 | 89 | 19 | -24.6 | NP_108659 | 5' arm 3' arm | ||
10629 | + | 8763 | 85 | 19 | -20.3 | NP_108659 | 5' arm 3' arm | ||
10645 | - | 5951 | 85 | 19.5 | -21 | NP_108658 | 5' arm 3' arm | ||
10626 | + | 3544 | 85 | 23 | -26.1 | NP_108657 | 5' arm 3' arm | ||
10641 | + | 20884 | 86 | 22.5 | -23.9 | 5' arm 3' arm | |||
10627 | + | 7452 | 90 | 22.5 | -26.1 | 5' arm 3' arm | |||
10625 | + | 58 | 90 | 20 | -31.4 | 5' arm 3' arm | |||
10659 | - | 32101 | 87 | 23.5 | -25.8 | 5' arm 3' arm | |||
10660 | - | 32537 | 89 | 21 | -26.7 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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