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GenBank Identifier | RefSeq Acc. | Name |
13487858 | NC_002702.1 | Porcine adenovirus C |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
10657 | - | 23914 | 89 | 21 | -24.4 | NP_108672 | 5' arm 3' arm | ||
10644 | + | 23827 | 90 | 21.5 | -22.8 | NP_108672 | 5' arm 3' arm | ||
10658 | - | 24056 | 85 | 21.5 | -24.4 | NP_108672 | 5' arm 3' arm | ||
10654 | - | 21580 | 90 | 22.5 | -30.1 | NP_108670 | 5' arm 3' arm | ||
10656 | - | 23299 | 90 | 24 | -24 | NP_108670 | 5' arm 3' arm | ||
10643 | + | 21174 | 87 | 19.5 | -24.2 | NP_108670 | 5' arm 3' arm | ||
10655 | - | 22847 | 87 | 20 | -26.8 | NP_108670 | 5' arm 3' arm | ||
10640 | + | 19824 | 90 | 24.5 | -22.3 | NP_108669 | 5' arm 3' arm | ||
10642 | + | 21029 | 90 | 21 | -31.6 | NP_108669 | 5' arm 3' arm | ||
10653 | - | 18240 | 85 | 22 | -24.5 | NP_108667 | 5' arm 3' arm | ||
10652 | - | 16591 | 90 | 23.5 | -22 | NP_108667 | 5' arm 3' arm | ||
10639 | + | 15963 | 82 | 19 | -24.4 | NP_108666 | 5' arm 3' arm | ||
10638 | + | 15510 | 89 | 20.5 | -24.7 | NP_108665 | 5' arm 3' arm | ||
10651 | - | 15251 | 90 | 21.5 | -24.7 | NP_108664 | 5' arm 3' arm | ||
10650 | - | 14520 | 74 | 21.5 | -26.9 | NP_108664 | 5' arm 3' arm | ||
10637 | + | 14660 | 88 | 20 | -22.2 | NP_108664 | 5' arm 3' arm | ||
10649 | - | 13875 | 90 | 20 | -28 | NP_108663 | 5' arm 3' arm | ||
10636 | + | 13159 | 86 | 21 | -24.4 | NP_108662 | 5' arm 3' arm | ||
10635 | + | 12748 | 86 | 20 | -22.4 | NP_108662 | 5' arm 3' arm | ||
10634 | + | 12576 | 85 | 19.5 | -21 | NP_108662 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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