miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13487858 NC_002702.1 Porcine adenovirus C

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10625 + 58 90 20 -31.4 5' arm      3' arm
10626 + 3544 85 23 -26.1 NP_108657 5' arm      3' arm
10627 + 7452 90 22.5 -26.1 5' arm      3' arm
10628 + 8249 89 19 -23.8 NP_108659 5' arm      3' arm
10629 + 8763 85 19 -20.3 NP_108659 5' arm      3' arm
10630 + 9549 89 20 -21.9 NP_108660 5' arm      3' arm
10631 + 10254 76 19.5 -24.2 NP_108660 5' arm      3' arm
10632 + 10674 88 29 -23.1 NP_108661 5' arm      3' arm
10633 + 12029 89 20 -21.8 NP_108661 5' arm      3' arm
10634 + 12576 85 19.5 -21 NP_108662 5' arm      3' arm
10635 + 12748 86 20 -22.4 NP_108662 5' arm      3' arm
10636 + 13159 86 21 -24.4 NP_108662 5' arm      3' arm
10637 + 14660 88 20 -22.2 NP_108664 5' arm      3' arm
10638 + 15510 89 20.5 -24.7 NP_108665 5' arm      3' arm
10639 + 15963 82 19 -24.4 NP_108666 5' arm      3' arm
10640 + 19824 90 24.5 -22.3 NP_108669 5' arm      3' arm
10641 + 20884 86 22.5 -23.9 5' arm      3' arm
10642 + 21029 90 21 -31.6 NP_108669 5' arm      3' arm
10643 + 21174 87 19.5 -24.2 NP_108670 5' arm      3' arm
10644 + 23827 90 21.5 -22.8 NP_108672 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.