miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13487858 NC_002702.1 Porcine adenovirus C

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10660 - 32537 89 21 -26.7 5' arm      3' arm
10659 - 32101 87 23.5 -25.8 5' arm      3' arm
10658 - 24056 85 21.5 -24.4 NP_108672 5' arm      3' arm
10657 - 23914 89 21 -24.4 NP_108672 5' arm      3' arm
10656 - 23299 90 24 -24 NP_108670 5' arm      3' arm
10655 - 22847 87 20 -26.8 NP_108670 5' arm      3' arm
10654 - 21580 90 22.5 -30.1 NP_108670 5' arm      3' arm
10653 - 18240 85 22 -24.5 NP_108667 5' arm      3' arm
10652 - 16591 90 23.5 -22 NP_108667 5' arm      3' arm
10651 - 15251 90 21.5 -24.7 NP_108664 5' arm      3' arm
10650 - 14520 74 21.5 -26.9 NP_108664 5' arm      3' arm
10649 - 13875 90 20 -28 NP_108663 5' arm      3' arm
10648 - 13574 88 20 -24.5 NP_108662 5' arm      3' arm
10647 - 10761 88 21.5 -24.8 NP_108661 5' arm      3' arm
10646 - 8486 89 19 -24.6 NP_108659 5' arm      3' arm
10645 - 5951 85 19.5 -21 NP_108658 5' arm      3' arm
10644 + 23827 90 21.5 -22.8 NP_108672 5' arm      3' arm
10643 + 21174 87 19.5 -24.2 NP_108670 5' arm      3' arm
10642 + 21029 90 21 -31.6 NP_108669 5' arm      3' arm
10641 + 20884 86 22.5 -23.9 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.