miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
21009	-	39007	85	23	-29.7	NP_835630		5' arm      3' arm
21008	-	37937	90	19	-27	NP_835627		5' arm      3' arm
21007	-	29004	84	21	-22.6	NP_835619		5' arm      3' arm
21006	-	27419	90	20	-23	NP_835619		5' arm      3' arm
21005	-	25744	88	20	-22.1			5' arm      3' arm
21004	-	13699	85	23.5	-20.1	NP_835602		5' arm      3' arm
21003	-	11976	88	19.5	-26.8			5' arm      3' arm
21002	-	10432	89	20	-22.2	NP_835600		5' arm      3' arm
21001	-	1806	88	28	-20.4			5' arm      3' arm
21000	-	199	77	28.5	-32.3	NP_835588		5' arm      3' arm
20999	+	126730	90	21	-20.9	NP_835728		5' arm      3' arm
20998	+	125907	89	22.5	-20.4	NP_835728		5' arm      3' arm
20997	+	123022	90	20	-23	NP_835725		5' arm      3' arm
20996	+	116772	89	23	-19.5	NP_835715		5' arm      3' arm
20995	+	84656	90	19.5	-21.2	NP_835685		5' arm      3' arm
20994	+	79829	88	19	-20.1	NP_835679		5' arm      3' arm
20993	+	72598	90	21.5	-21.8	NP_835670		5' arm      3' arm
20992	+	45469	84	19	-27.7	NP_835645		5' arm      3' arm
20991	+	40185	89	25	-21.6			5' arm      3' arm
20990	+	39835	90	24.5	-26.9	NP_835631		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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