miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18640469 NC_003390.1 Cyanophage P60

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13053 - 3561 89 20 -24.5 NP_570316 5' arm      3' arm
13033 + 26938 89 24 -24.4 NP_570348 5' arm      3' arm
13075 - 36023 88 19 -24.2 NP_570364 5' arm      3' arm
13013 + 4794 90 21.5 -23.6 NP_570317 5' arm      3' arm
13036 + 29165 89 19 -23.5 NP_570351 5' arm      3' arm
13074 - 35915 88 21 -23.3 NP_570364 5' arm      3' arm
13047 + 42552 89 21 -23.1 NP_570379 5' arm      3' arm
13054 - 3976 87 21 -23.1 NP_570316 5' arm      3' arm
13055 - 6867 87 19 -23.1 NP_570319 5' arm      3' arm
13078 - 41365 87 19.5 -22.9 NP_570375 5' arm      3' arm
13028 + 20964 87 20.5 -22.8 NP_570341 5' arm      3' arm
13080 - 43560 87 21.5 -22.8 NP_570383 5' arm      3' arm
13022 + 10188 89 20 -22.7 NP_570322 5' arm      3' arm
13039 + 32347 90 21 -22.7 NP_570359 5' arm      3' arm
13077 - 38064 87 20 -22.7 NP_570367 5' arm      3' arm
13021 + 9866 90 24 -22.7 NP_570322 5' arm      3' arm
13044 + 38305 88 23 -22.5 NP_570367 5' arm      3' arm
13031 + 22885 90 21.5 -22.4 NP_570344 5' arm      3' arm
13062 - 11157 88 24 -22.4 NP_570324 5' arm      3' arm
13073 - 34380 87 19 -22.4 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.