miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18640469 NC_003390.1 Cyanophage P60

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13019 + 9075 88 21.5 -24.8 NP_570322 5' arm      3' arm
13043 + 37912 86 21 -22.1 NP_570367 5' arm      3' arm
13038 + 29533 90 21 -21.5 NP_570352 5' arm      3' arm
13047 + 42552 89 21 -23.1 NP_570379 5' arm      3' arm
13065 - 20259 90 21 -21.5 NP_570339 5' arm      3' arm
13046 + 39465 86 21 -20.6 NP_570370 5' arm      3' arm
13039 + 32347 90 21 -22.7 NP_570359 5' arm      3' arm
13063 - 12475 90 21 -21.8 NP_570328 5' arm      3' arm
13054 - 3976 87 21 -23.1 NP_570316 5' arm      3' arm
13074 - 35915 88 21 -23.3 NP_570364 5' arm      3' arm
13016 + 6987 90 21 -19.9 NP_570319 5' arm      3' arm
13011 + 3715 89 21 -20.2 NP_570316 5' arm      3' arm
13030 + 22559 88 21 -21.9 NP_570343 5' arm      3' arm
13072 - 29251 85 21 -28.5 NP_570351 5' arm      3' arm
13069 - 26895 90 20.5 -21.51 NP_570348 5' arm      3' arm
13020 + 9334 89 20.5 -30.6 NP_570322 5' arm      3' arm
13045 + 38801 86 20.5 -19.9 NP_570369 5' arm      3' arm
13028 + 20964 87 20.5 -22.8 NP_570341 5' arm      3' arm
13060 - 9595 88 20.5 -27.6 NP_570322 5' arm      3' arm
13079 - 42641 88 20 -36 NP_570379 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.