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| GenBank Identifier | RefSeq Acc. | Name |
| 18653809 | NC_003401.1 | Cercopithecine herpesvirus 17 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13266 | - | 118740 | 89 | 23 | -30.4 | NP_598366 | 5' arm 3' arm | ||
| 13157 | + | 118653 | 88 | 25.5 | -33.7 | NP_598366 | 5' arm 3' arm | ||
| 13265 | - | 118605 | 88 | 24.5 | -31.7 | NP_598366 | 5' arm 3' arm | ||
| 13252 | - | 113572 | 88 | 26.5 | -30.3 | NP_598364 | 5' arm 3' arm | ||
| 13148 | + | 113487 | 84 | 24.5 | -32.8 | NP_598364 | 5' arm 3' arm | ||
| 13224 | - | 72011 | 89 | 21 | -24.7 | NP_598361 | 5' arm 3' arm | ||
| 13110 | + | 23541 | 90 | 21 | -21.9 | NP_598359 | 5' arm 3' arm | ||
| 13170 | + | 128333 | 89 | 23 | -21.7 | NP_570823 | 5' arm 3' arm | ||
| 13169 | + | 128023 | 90 | 21.5 | -19.9 | NP_570823 | 5' arm 3' arm | ||
| 13166 | + | 125872 | 88 | 23 | -19.5 | NP_570823 | 5' arm 3' arm | ||
| 13171 | + | 128482 | 88 | 20 | -27.7 | NP_570823 | 5' arm 3' arm | ||
| 13165 | + | 125715 | 88 | 22.5 | -23.9 | NP_570823 | 5' arm 3' arm | ||
| 13271 | - | 126384 | 87 | 20.5 | -20.7 | NP_570823 | 5' arm 3' arm | ||
| 13167 | + | 126151 | 89 | 21 | -19.9 | NP_570823 | 5' arm 3' arm | ||
| 13168 | + | 126555 | 90 | 22 | -23.5 | NP_570823 | 5' arm 3' arm | ||
| 13270 | - | 125718 | 88 | 20.5 | -27.4 | NP_570823 | 5' arm 3' arm | ||
| 13164 | + | 125239 | 90 | 22.5 | -23.1 | NP_570823 | 5' arm 3' arm | ||
| 13163 | + | 124418 | 90 | 21.5 | -26.42 | NP_570822 | 5' arm 3' arm | ||
| 13269 | - | 123395 | 90 | 22.5 | -19.7 | NP_570821 | 5' arm 3' arm | ||
| 13160 | + | 120960 | 90 | 22 | -30.4 | NP_570820 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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