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| GenBank Identifier | RefSeq Acc. | Name |
| 18653809 | NC_003401.1 | Cercopithecine herpesvirus 17 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13268 | - | 122600 | 86 | 20.5 | -26.4 | 5' arm 3' arm | |||
| 13111 | + | 26669 | 89 | 23 | -20.6 | 5' arm 3' arm | |||
| 13096 | + | 624 | 89 | 25.5 | -26 | 5' arm 3' arm | |||
| 13092 | + | 120 | 89 | 24 | -27.6 | 5' arm 3' arm | |||
| 13094 | + | 367 | 90 | 21.5 | -20.8 | 5' arm 3' arm | |||
| 13093 | + | 209 | 90 | 21 | -25.2 | 5' arm 3' arm | |||
| 13091 | + | 13 | 86 | 20.5 | -20.2 | 5' arm 3' arm | |||
| 13097 | + | 726 | 90 | 19 | -21.6 | 5' arm 3' arm | |||
| 13258 | - | 114876 | 84 | 27 | -21.9 | 5' arm 3' arm | |||
| 13257 | - | 114772 | 89 | 27 | -28.7 | 5' arm 3' arm | |||
| 13249 | - | 113152 | 89 | 28 | -32.7 | 5' arm 3' arm | |||
| 13263 | - | 118317 | 89 | 21 | -33.1 | 5' arm 3' arm | |||
| 13260 | - | 116885 | 89 | 23 | -30.4 | 5' arm 3' arm | |||
| 13109 | + | 22155 | 89 | 21 | -19.5 | 5' arm 3' arm | |||
| 13264 | - | 118414 | 90 | 22.5 | -21.8 | 5' arm 3' arm | |||
| 13262 | - | 117813 | 85 | 22 | -20.86 | 5' arm 3' arm | |||
| 13253 | - | 113748 | 87 | 29 | -24.9 | 5' arm 3' arm | |||
| 13254 | - | 113934 | 86 | 29.5 | -20 | 5' arm 3' arm | |||
| 13259 | - | 116703 | 90 | 22.5 | -23.8 | 5' arm 3' arm | |||
| 13095 | + | 466 | 89 | 26 | -22.6 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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