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GenBank Identifier | RefSeq Acc. | Name |
20806021 | NC_003860.1 | Squash yellow mild mottle virus DNA B |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15313 | + | 2520 | 88 | 21 | -25.3 | 5' arm 3' arm | |||
15314 | - | 2608 | 90 | 19 | -26.41 | 5' arm 3' arm | |||
15317 | + | 2242 | 89 | 19 | -19.9 | NP_620883 | 5' arm 3' arm | ||
15318 | + | 2520 | 89 | 21.5 | -28.7 | 5' arm 3' arm | |||
15319 | - | 2606 | 85 | 21 | -24.71 | 5' arm 3' arm | |||
20979 | + | 2521 | 87 | 21.5 | -26.2 | 5' arm 3' arm | |||
20980 | - | 428 | 86 | 19.5 | -23.6 | NP_835272 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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