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GenBank Identifier | RefSeq Acc. | Name |
50261346 | NC_005985.1 | Pelargonium chlorotic ring pattern virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28614 | + | 37 | 89 | 25 | -25.9 | YP_052926 | 5' arm 3' arm | ||
28615 | + | 663 | 87 | 19.5 | -21.6 | YP_052926 | 5' arm 3' arm | ||
28616 | + | 904 | 80 | 23 | -26.3 | YP_052925 | 5' arm 3' arm | ||
28617 | + | 3384 | 89 | 20 | -24.7 | YP_052929 | 5' arm 3' arm | ||
28618 | - | 3322 | 90 | 19 | -22.6 | YP_052930 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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