miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
73852470 NC_007346.1 Emiliania huxleyi virus 86

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
32765 + 50767 87 21 -20.7 YP_293809 5' arm      3' arm
32766 + 77656 88 22.5 -21 YP_293830 5' arm      3' arm
32767 + 86512 87 20.5 -24.1 YP_293839 5' arm      3' arm
32768 + 86992 88 19 -21 YP_293839 5' arm      3' arm
32769 + 87143 89 22.5 -28.4 YP_293839 5' arm      3' arm
32770 + 103209 90 21.5 -23.5 YP_293859 5' arm      3' arm
32771 + 109517 89 25 -29.1 YP_293865 5' arm      3' arm
32772 + 110199 87 22 -24.9 YP_293866 5' arm      3' arm
32773 + 156203 89 19 -27.1 YP_293921 5' arm      3' arm
32774 + 156390 89 19.5 -19.6 YP_293921 5' arm      3' arm
32775 + 160297 89 19.5 -21.2 YP_293925 5' arm      3' arm
32776 + 164860 89 19.5 -25.2 YP_293929 5' arm      3' arm
32777 + 165730 88 19 -22.1 YP_293929 5' arm      3' arm
32778 + 170948 88 20.5 -20.8 YP_293936 5' arm      3' arm
32779 + 171085 90 19.5 -28 YP_293936 5' arm      3' arm
32780 + 217093 89 21 -24 YP_293981 5' arm      3' arm
32781 + 238454 89 19 -19.8 YP_294020 5' arm      3' arm
32782 + 238704 90 21 -25.5 YP_294020 5' arm      3' arm
32783 + 238899 88 20 -22.9 YP_294020 5' arm      3' arm
32784 + 239492 88 20.5 -27.3 YP_294021 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.