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GenBank Identifier | RefSeq Acc. | Name |
23217032 | NC_004194.1 | Equinus papillomavirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
16838 | + | 1316 | 90 | 20.5 | -24.5 | NP_694426 | 5' arm 3' arm | ||
16839 | + | 3133 | 87 | 21.5 | -20.8 | NP_694427 | 5' arm 3' arm | ||
16840 | + | 4092 | 88 | 24 | -23.5 | NP_694428 | 5' arm 3' arm | ||
16841 | + | 4354 | 90 | 24.5 | -31.5 | NP_694428 | 5' arm 3' arm | ||
16842 | + | 7269 | 81 | 19.5 | -23.8 | 5' arm 3' arm | |||
16843 | - | 3271 | 88 | 20 | -26.1 | NP_694427 | 5' arm 3' arm | ||
16844 | - | 3905 | 90 | 20 | -30 | NP_694428 | 5' arm 3' arm | ||
16845 | - | 4248 | 90 | 19.5 | -25.13 | NP_694428 | 5' arm 3' arm | ||
16846 | - | 4502 | 90 | 20.5 | -20.3 | NP_694428 | 5' arm 3' arm | ||
16847 | - | 4687 | 87 | 19 | -19.6 | NP_694428 | 5' arm 3' arm | ||
16848 | - | 6518 | 89 | 24.5 | -25.6 | NP_694429 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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