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| GenBank Identifier | RefSeq Acc. | Name |
| 20026600 | NC_003521.1 | Chimpanzee cytomegalovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13971 | + | 32315 | 89 | 21.5 | -19.4 | NP_612671 | 5' arm 3' arm | ||
| 14453 | - | 93112 | 87 | 20.5 | -19.4 | 5' arm 3' arm | |||
| 13985 | + | 38148 | 89 | 19 | -19.4 | NP_612676 | 5' arm 3' arm | ||
| 14266 | + | 220860 | 88 | 21 | -19.5 | 5' arm 3' arm | |||
| 14148 | + | 134379 | 88 | 22.5 | -19.5 | NP_612722 | 5' arm 3' arm | ||
| 14360 | - | 44162 | 87 | 21.5 | -19.5 | NP_612679 | 5' arm 3' arm | ||
| 14006 | + | 51571 | 85 | 21 | -19.5 | 5' arm 3' arm | |||
| 14070 | + | 98817 | 89 | 23 | -19.5 | NP_612702 | 5' arm 3' arm | ||
| 14588 | - | 211231 | 90 | 20 | -19.5 | NP_612783 | 5' arm 3' arm | ||
| 14283 | + | 232785 | 87 | 19.5 | -19.5 | NP_612801 | 5' arm 3' arm | ||
| 14096 | + | 110588 | 90 | 19.5 | -19.5 | NP_612708 | 5' arm 3' arm | ||
| 14309 | - | 10737 | 89 | 21.5 | -19.5 | NP_612649 | 5' arm 3' arm | ||
| 14089 | + | 105367 | 90 | 21.5 | -19.5 | 5' arm 3' arm | |||
| 14167 | + | 141423 | 90 | 23.5 | -19.5 | NP_612727 | 5' arm 3' arm | ||
| 14447 | - | 90307 | 90 | 22.5 | -19.6 | 5' arm 3' arm | |||
| 14280 | + | 228936 | 88 | 23 | -19.6 | NP_612798 | 5' arm 3' arm | ||
| 14528 | - | 156931 | 85 | 21 | -19.6 | NP_612736 | 5' arm 3' arm | ||
| 13943 | + | 12208 | 90 | 22 | -19.6 | NP_612651 | 5' arm 3' arm | ||
| 14136 | + | 127862 | 90 | 19.5 | -19.7 | NP_612719 | 5' arm 3' arm | ||
| 14630 | - | 228521 | 90 | 21 | -19.7 | NP_612798 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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