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GenBank Identifier | RefSeq Acc. | Name |
20026600 | NC_003521.1 | Chimpanzee cytomegalovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
13935 | + | 5516 | 89 | 20.5 | -28.6 | 5' arm 3' arm | |||
13938 | + | 6377 | 90 | 21 | -28.1 | 5' arm 3' arm | |||
13936 | + | 5788 | 89 | 21.5 | -31.3 | 5' arm 3' arm | |||
13939 | + | 6488 | 89 | 23.5 | -20.7 | 5' arm 3' arm | |||
13937 | + | 6009 | 90 | 24 | -20.8 | 5' arm 3' arm | |||
14243 | + | 200876 | 90 | 23 | -29.7 | 5' arm 3' arm | |||
14242 | + | 200778 | 89 | 20.5 | -24.5 | 5' arm 3' arm | |||
14146 | + | 133605 | 88 | 24 | -25.7 | 5' arm 3' arm | |||
14105 | + | 113956 | 89 | 20 | -27 | 5' arm 3' arm | |||
14100 | + | 111304 | 89 | 20 | -22.6 | 5' arm 3' arm | |||
14187 | + | 163653 | 89 | 19 | -22.6 | 5' arm 3' arm | |||
14185 | + | 160920 | 90 | 21 | -23.62 | 5' arm 3' arm | |||
14183 | + | 160017 | 88 | 20.5 | -31.5 | 5' arm 3' arm | |||
14182 | + | 159926 | 81 | 19 | -24.9 | 5' arm 3' arm | |||
14214 | + | 176668 | 83 | 21.5 | -24.9 | 5' arm 3' arm | |||
14204 | + | 170078 | 90 | 21.5 | -23.8 | 5' arm 3' arm | |||
13955 | + | 25309 | 90 | 28 | -23.9 | 5' arm 3' arm | |||
14221 | + | 180691 | 88 | 22 | -22.7 | 5' arm 3' arm | |||
14215 | + | 177337 | 84 | 21 | -29.1 | 5' arm 3' arm | |||
14231 | + | 193292 | 89 | 22.5 | -24.9 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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