miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9633173 NC_000899.1 Fowl adenovirus D

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
947 - 43584 90 23 -25.8 NP_597831 5' arm      3' arm
946 - 38608 90 20.5 -26 NP_597828 5' arm      3' arm
945 - 38462 88 21 -20.2 NP_597828 5' arm      3' arm
944 - 38359 87 19 -24.3 NP_597828 5' arm      3' arm
943 - 37970 90 22 -21 NP_597828 5' arm      3' arm
942 - 37696 87 20 -23.4 5' arm      3' arm
941 - 37523 87 20 -19.4 5' arm      3' arm
940 - 31026 89 21.5 -23 NP_050293 5' arm      3' arm
939 - 30301 88 21.5 -19.8 NP_050293 5' arm      3' arm
938 - 29529 90 21 -22.7 NP_050292 5' arm      3' arm
937 - 29387 90 22.5 -23.3 NP_050292 5' arm      3' arm
936 - 28889 86 19.5 -29.7 NP_050291 5' arm      3' arm
935 - 28546 88 23 -21.3 NP_050291 5' arm      3' arm
934 - 28371 88 23.5 -21.9 NP_050291 5' arm      3' arm
933 - 28082 89 19.5 -23.7 NP_050290 5' arm      3' arm
932 - 22378 87 24 -21.2 NP_050287 5' arm      3' arm
931 - 20764 86 22.5 -24.2 NP_050287 5' arm      3' arm
930 - 18212 89 19 -25.4 5' arm      3' arm
929 - 17809 90 21.5 -19.6 NP_050284 5' arm      3' arm
928 - 16937 90 20 -22.9 NP_050284 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.