miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26481 + 14633 87 25 -25.7 NP_958681 5' arm      3' arm
26482 + 14923 89 22 -20.2 NP_958681 5' arm      3' arm
26483 + 15019 89 25 -29.3 NP_958681 5' arm      3' arm
26484 + 15559 90 19 -23.4 NP_958682 5' arm      3' arm
26485 + 16014 90 20.5 -23.6 NP_958682 5' arm      3' arm
26486 + 16105 90 21.5 -23.9 NP_958682 5' arm      3' arm
26487 + 16207 89 19 -27.9 NP_958682 5' arm      3' arm
26488 + 16374 90 22.5 -22.4 NP_958682 5' arm      3' arm
26489 + 16486 90 21 -21.7 NP_958682 5' arm      3' arm
26490 + 16704 84 21 -22.8 NP_958682 5' arm      3' arm
26491 + 16815 86 19.5 -28 NP_958682 5' arm      3' arm
26492 + 17064 90 21.5 -22 NP_958682 5' arm      3' arm
26493 + 17573 89 22.5 -33.8 NP_958683 5' arm      3' arm
26494 + 17778 90 19 -23.2 NP_958683 5' arm      3' arm
26495 + 18408 90 22.5 -23.1 NP_958685 5' arm      3' arm
26496 + 18535 88 22 -21.8 NP_958685 5' arm      3' arm
26497 + 18940 89 20.5 -19.8 NP_958686 5' arm      3' arm
26498 + 19264 85 22.5 -23.4 NP_958686 5' arm      3' arm
26499 + 19532 89 23.5 -27 NP_958686 5' arm      3' arm
26500 + 19800 88 21.5 -31.6 NP_958687 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.