miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26583 - 31156 85 20 -20.4 NP_958701 5' arm      3' arm
26582 - 30335 88 22 -22.5 NP_958699 5' arm      3' arm
26581 - 29942 89 19.5 -22.4 NP_958699 5' arm      3' arm
26580 - 29578 90 22.5 -19.5 NP_958698 5' arm      3' arm
26579 - 29467 90 21 -24.3 NP_958698 5' arm      3' arm
26578 - 29010 86 21 -19.4 NP_958698 5' arm      3' arm
26577 - 28358 87 21.5 -26.2 NP_958698 5' arm      3' arm
26576 - 28025 86 20 -25.4 NP_958698 5' arm      3' arm
26575 - 27357 86 20.5 -21.5 NP_958698 5' arm      3' arm
26574 - 27007 86 22 -20.8 NP_958697 5' arm      3' arm
26573 - 26490 86 19 -19.9 NP_958696 5' arm      3' arm
26572 - 25101 89 23.5 -24.5 NP_958694 5' arm      3' arm
26571 - 24556 89 22.5 -21.7 NP_958694 5' arm      3' arm
26570 - 24151 87 22 -32.7 5' arm      3' arm
26569 - 23953 90 22.5 -25.6 NP_958693 5' arm      3' arm
26568 - 23571 87 20.5 -22.7 NP_958692 5' arm      3' arm
26567 - 22048 88 20.5 -22.4 NP_958690 5' arm      3' arm
26566 - 21439 89 21.5 -25.1 NP_958690 5' arm      3' arm
26565 - 20061 90 20.5 -22.2 NP_958687 5' arm      3' arm
26564 - 19002 89 19.5 -20.3 NP_958686 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.