miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26603 - 36248 88 24.5 -22.7 5' arm      3' arm
26602 - 36029 90 19.5 -20 NP_958709 5' arm      3' arm
26601 - 35934 90 20 -20.5 NP_958709 5' arm      3' arm
26600 - 35811 87 22 -22 NP_958709 5' arm      3' arm
26599 - 35707 88 19.5 -20.1 NP_958709 5' arm      3' arm
26598 - 35535 90 25.5 -22.4 NP_958708 5' arm      3' arm
26597 - 35173 89 23 -20.2 NP_958707 5' arm      3' arm
26596 - 34960 88 23 -23.2 NP_958707 5' arm      3' arm
26595 - 34255 87 22.5 -25.5 NP_958707 5' arm      3' arm
26594 - 34117 87 20 -24.9 NP_958706 5' arm      3' arm
26593 - 34025 89 19 -25.9 NP_958706 5' arm      3' arm
26592 - 33832 89 22 -29.2 NP_958706 5' arm      3' arm
26591 - 33678 87 21 -19.5 NP_958705 5' arm      3' arm
26590 - 32652 86 19.5 -26.1 NP_958704 5' arm      3' arm
26589 - 32507 89 26.5 -25 NP_958704 5' arm      3' arm
26588 - 32395 89 24 -24 NP_958704 5' arm      3' arm
26587 - 32294 88 19.5 -19.6 NP_958703 5' arm      3' arm
26586 - 32152 89 23 -27.4 5' arm      3' arm
26585 - 31853 85 22 -24.3 5' arm      3' arm
26584 - 31748 90 22 -21.9 NP_958702 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.