miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26622 - 42124 90 19.5 -27.7 NP_958719 5' arm      3' arm
26463 + 8891 89 19.5 -23.7 NP_958679 5' arm      3' arm
26552 - 9907 90 19.5 -20.8 NP_958679 5' arm      3' arm
26501 + 19919 85 19.5 -19.6 NP_958687 5' arm      3' arm
26491 + 16815 86 19.5 -28 NP_958682 5' arm      3' arm
26587 - 32294 88 19.5 -19.6 NP_958703 5' arm      3' arm
26530 + 34979 89 19.5 -23.5 NP_958707 5' arm      3' arm
26551 - 7831 86 19.5 -34.1 NP_958679 5' arm      3' arm
26441 + 637 83 19.5 -29.5 NP_958671 5' arm      3' arm
26446 + 2165 90 19.5 -28.2 NP_958675 5' arm      3' arm
26537 + 40716 90 19.5 -29.5 NP_958716 5' arm      3' arm
26520 + 27694 88 19.5 -26 NP_958698 5' arm      3' arm
26590 - 32652 86 19.5 -26.1 NP_958704 5' arm      3' arm
26602 - 36029 90 19.5 -20 NP_958709 5' arm      3' arm
26456 + 5330 89 20 -25.5 NP_958678 5' arm      3' arm
26539 - 1050 90 20 -25.3 NP_958672 5' arm      3' arm
26525 + 31275 84 20 -25.1 NP_958701 5' arm      3' arm
26601 - 35934 90 20 -20.5 NP_958709 5' arm      3' arm
26452 + 4583 89 20 -23.8 NP_958678 5' arm      3' arm
26512 + 22874 89 20 -26.2 NP_958691 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.