miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26449 + 4033 83 23.5 -20 NP_958677 5' arm      3' arm
26586 - 32152 89 23 -27.4 5' arm      3' arm
26597 - 35173 89 23 -20.2 NP_958707 5' arm      3' arm
26535 + 40078 90 23 -21.7 NP_958716 5' arm      3' arm
26448 + 2657 89 23 -24.3 NP_958675 5' arm      3' arm
26509 + 22059 90 23 -37.4 NP_958690 5' arm      3' arm
26606 - 37057 82 23 -20.7 NP_958711 5' arm      3' arm
26596 - 34960 88 23 -23.2 NP_958707 5' arm      3' arm
26612 - 38285 89 23 -25.4 NP_958711 5' arm      3' arm
26549 - 7219 88 23 -27.8 NP_958679 5' arm      3' arm
26515 + 24594 90 23 -24.2 NP_958694 5' arm      3' arm
26444 + 1177 90 22.5 -22 NP_958672 5' arm      3' arm
26498 + 19264 85 22.5 -23.4 NP_958686 5' arm      3' arm
26580 - 29578 90 22.5 -19.5 NP_958698 5' arm      3' arm
26493 + 17573 89 22.5 -33.8 NP_958683 5' arm      3' arm
26569 - 23953 90 22.5 -25.6 NP_958693 5' arm      3' arm
26571 - 24556 89 22.5 -21.7 NP_958694 5' arm      3' arm
26495 + 18408 90 22.5 -23.1 NP_958685 5' arm      3' arm
26488 + 16374 90 22.5 -22.4 NP_958682 5' arm      3' arm
26595 - 34255 87 22.5 -25.5 NP_958707 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.