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| GenBank Identifier | RefSeq Acc. | Name |
| 41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26543 | - | 3090 | 90 | 20.5 | -22.5 | NP_958676 | 5' arm 3' arm | ||
| 26544 | - | 4234 | 85 | 19 | -20.3 | NP_958677 | 5' arm 3' arm | ||
| 26450 | + | 4118 | 90 | 21.5 | -22 | NP_958677 | 5' arm 3' arm | ||
| 26451 | + | 4336 | 89 | 20 | -24.5 | NP_958677 | 5' arm 3' arm | ||
| 26449 | + | 4033 | 83 | 23.5 | -20 | NP_958677 | 5' arm 3' arm | ||
| 26545 | - | 5398 | 75 | 20 | -23.8 | NP_958678 | 5' arm 3' arm | ||
| 26452 | + | 4583 | 89 | 20 | -23.8 | NP_958678 | 5' arm 3' arm | ||
| 26453 | + | 4829 | 90 | 24.5 | -22.1 | NP_958678 | 5' arm 3' arm | ||
| 26457 | + | 5566 | 88 | 21.5 | -22.1 | NP_958678 | 5' arm 3' arm | ||
| 26458 | + | 5692 | 90 | 21.5 | -20.3 | NP_958678 | 5' arm 3' arm | ||
| 26546 | - | 6057 | 85 | 22 | -24.6 | NP_958678 | 5' arm 3' arm | ||
| 26454 | + | 5075 | 89 | 24 | -21.8 | NP_958678 | 5' arm 3' arm | ||
| 26456 | + | 5330 | 89 | 20 | -25.5 | NP_958678 | 5' arm 3' arm | ||
| 26455 | + | 5229 | 90 | 25.5 | -25.3 | NP_958678 | 5' arm 3' arm | ||
| 26472 | + | 12160 | 90 | 21 | -19.8 | NP_958679 | 5' arm 3' arm | ||
| 26460 | + | 7132 | 88 | 23.5 | -25.9 | NP_958679 | 5' arm 3' arm | ||
| 26463 | + | 8891 | 89 | 19.5 | -23.7 | NP_958679 | 5' arm 3' arm | ||
| 26471 | + | 11890 | 90 | 23.5 | -22.6 | NP_958679 | 5' arm 3' arm | ||
| 26549 | - | 7219 | 88 | 23 | -27.8 | NP_958679 | 5' arm 3' arm | ||
| 26468 | + | 10817 | 90 | 22 | -23.3 | NP_958679 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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