miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26585 - 31853 85 22 -24.3 5' arm      3' arm
26603 - 36248 88 24.5 -22.7 5' arm      3' arm
26504 + 20612 86 20 -26.5 5' arm      3' arm
26547 - 6191 81 20 -30.8 5' arm      3' arm
26570 - 24151 87 22 -32.7 5' arm      3' arm
26586 - 32152 89 23 -27.4 5' arm      3' arm
26561 - 18015 90 20 -25.8 5' arm      3' arm
26441 + 637 83 19.5 -29.5 NP_958671 5' arm      3' arm
26538 - 419 88 21.5 -21.7 NP_958671 5' arm      3' arm
26539 - 1050 90 20 -25.3 NP_958672 5' arm      3' arm
26444 + 1177 90 22.5 -22 NP_958672 5' arm      3' arm
26443 + 1074 89 20.5 -24.8 NP_958672 5' arm      3' arm
26442 + 823 88 19 -22.7 NP_958672 5' arm      3' arm
26540 - 1495 90 20 -28.1 NP_958673 5' arm      3' arm
26541 - 1596 85 22 -29.6 NP_958674 5' arm      3' arm
26445 + 1656 90 22 -22.9 NP_958674 5' arm      3' arm
26542 - 2177 90 21 -24.3 NP_958675 5' arm      3' arm
26446 + 2165 90 19.5 -28.2 NP_958675 5' arm      3' arm
26448 + 2657 89 23 -24.3 NP_958675 5' arm      3' arm
26447 + 2545 90 24 -22.6 NP_958675 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.