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GenBank Identifier | RefSeq Acc. | Name |
41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF![]() |
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
26585 | - | 31853 | 85 | 22 | -24.3 | 5' arm 3' arm | |||
26603 | - | 36248 | 88 | 24.5 | -22.7 | 5' arm 3' arm | |||
26504 | + | 20612 | 86 | 20 | -26.5 | 5' arm 3' arm | |||
26547 | - | 6191 | 81 | 20 | -30.8 | 5' arm 3' arm | |||
26570 | - | 24151 | 87 | 22 | -32.7 | 5' arm 3' arm | |||
26586 | - | 32152 | 89 | 23 | -27.4 | 5' arm 3' arm | |||
26561 | - | 18015 | 90 | 20 | -25.8 | 5' arm 3' arm | |||
26441 | + | 637 | 83 | 19.5 | -29.5 | NP_958671 | 5' arm 3' arm | ||
26538 | - | 419 | 88 | 21.5 | -21.7 | NP_958671 | 5' arm 3' arm | ||
26539 | - | 1050 | 90 | 20 | -25.3 | NP_958672 | 5' arm 3' arm | ||
26444 | + | 1177 | 90 | 22.5 | -22 | NP_958672 | 5' arm 3' arm | ||
26443 | + | 1074 | 89 | 20.5 | -24.8 | NP_958672 | 5' arm 3' arm | ||
26442 | + | 823 | 88 | 19 | -22.7 | NP_958672 | 5' arm 3' arm | ||
26540 | - | 1495 | 90 | 20 | -28.1 | NP_958673 | 5' arm 3' arm | ||
26541 | - | 1596 | 85 | 22 | -29.6 | NP_958674 | 5' arm 3' arm | ||
26445 | + | 1656 | 90 | 22 | -22.9 | NP_958674 | 5' arm 3' arm | ||
26542 | - | 2177 | 90 | 21 | -24.3 | NP_958675 | 5' arm 3' arm | ||
26446 | + | 2165 | 90 | 19.5 | -28.2 | NP_958675 | 5' arm 3' arm | ||
26448 | + | 2657 | 89 | 23 | -24.3 | NP_958675 | 5' arm 3' arm | ||
26447 | + | 2545 | 90 | 24 | -22.6 | NP_958675 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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