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| GenBank Identifier | RefSeq Acc. | Name |
| 41179361 | NC_005357.1 | Bordetella phage BPP-1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 26509 | + | 22059 | 90 | 23 | -37.4 | NP_958690 | 5' arm 3' arm | ||
| 26551 | - | 7831 | 86 | 19.5 | -34.1 | NP_958679 | 5' arm 3' arm | ||
| 26608 | - | 37416 | 80 | 21.5 | -34.1 | NP_958711 | 5' arm 3' arm | ||
| 26493 | + | 17573 | 89 | 22.5 | -33.8 | NP_958683 | 5' arm 3' arm | ||
| 26617 | - | 40167 | 90 | 24.5 | -33.4 | NP_958716 | 5' arm 3' arm | ||
| 26570 | - | 24151 | 87 | 22 | -32.7 | 5' arm 3' arm | |||
| 26500 | + | 19800 | 88 | 21.5 | -31.6 | NP_958687 | 5' arm 3' arm | ||
| 26547 | - | 6191 | 81 | 20 | -30.8 | 5' arm 3' arm | |||
| 26562 | - | 18191 | 90 | 21 | -30.6 | NP_958684 | 5' arm 3' arm | ||
| 26516 | + | 25780 | 90 | 22.5 | -30.3 | NP_958695 | 5' arm 3' arm | ||
| 26541 | - | 1596 | 85 | 22 | -29.6 | NP_958674 | 5' arm 3' arm | ||
| 26537 | + | 40716 | 90 | 19.5 | -29.5 | NP_958716 | 5' arm 3' arm | ||
| 26441 | + | 637 | 83 | 19.5 | -29.5 | NP_958671 | 5' arm 3' arm | ||
| 26483 | + | 15019 | 89 | 25 | -29.3 | NP_958681 | 5' arm 3' arm | ||
| 26620 | - | 41417 | 90 | 22.5 | -29.2 | NP_958719 | 5' arm 3' arm | ||
| 26592 | - | 33832 | 89 | 22 | -29.2 | NP_958706 | 5' arm 3' arm | ||
| 26559 | - | 17076 | 90 | 23.5 | -28.8 | NP_958682 | 5' arm 3' arm | ||
| 26470 | + | 11480 | 90 | 20.5 | -28.5 | NP_958679 | 5' arm 3' arm | ||
| 26531 | + | 36514 | 88 | 22 | -28.4 | NP_958711 | 5' arm 3' arm | ||
| 26446 | + | 2165 | 90 | 19.5 | -28.2 | NP_958675 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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