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| GenBank Identifier | RefSeq Acc. | Name |
| 22549402 | NC_004117.1 | Mamestra configurata nucleopolyhedrovirus B |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16583 | - | 32143 | 90 | 21.5 | -32.8 | NP_689207 | 5' arm 3' arm | ||
| 16590 | - | 96582 | 86 | 25.5 | -29.89 | NP_689275 | 5' arm 3' arm | ||
| 16569 | + | 19904 | 86 | 24 | -28.2 | NP_689194 | 5' arm 3' arm | ||
| 16565 | + | 18102 | 90 | 19 | -26.7 | NP_689193 | 5' arm 3' arm | ||
| 16576 | + | 97790 | 86 | 28 | -26.7 | NP_689277 | 5' arm 3' arm | ||
| 16580 | - | 18323 | 86 | 22 | -26.4 | 5' arm 3' arm | |||
| 16589 | - | 92876 | 90 | 19 | -25.6 | NP_689273 | 5' arm 3' arm | ||
| 16592 | - | 129849 | 88 | 23 | -25.1 | NP_689312 | 5' arm 3' arm | ||
| 16588 | - | 83904 | 84 | 19.5 | -25.1 | NP_689264 | 5' arm 3' arm | ||
| 16573 | + | 67701 | 90 | 20 | -24.4 | NP_689248 | 5' arm 3' arm | ||
| 16591 | - | 112258 | 87 | 24 | -23.6 | NP_689291 | 5' arm 3' arm | ||
| 16579 | - | 7434 | 89 | 21 | -23.34 | NP_689181 | 5' arm 3' arm | ||
| 16581 | - | 19810 | 88 | 21 | -23.3 | NP_689194 | 5' arm 3' arm | ||
| 16564 | + | 16237 | 88 | 23 | -23.3 | NP_689190 | 5' arm 3' arm | ||
| 16578 | - | 6006 | 90 | 20.5 | -22.9 | NP_689180 | 5' arm 3' arm | ||
| 16575 | + | 96247 | 90 | 22 | -22.8 | NP_689275 | 5' arm 3' arm | ||
| 16572 | + | 59092 | 88 | 23 | -22.7 | NP_689238 | 5' arm 3' arm | ||
| 16567 | + | 19263 | 90 | 19.5 | -22.4 | NP_689194 | 5' arm 3' arm | ||
| 16577 | + | 146954 | 88 | 20.5 | -22 | NP_689331 | 5' arm 3' arm | ||
| 16582 | - | 31549 | 89 | 22 | -21.8 | NP_689206 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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