miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565766 NC_004680.1 Mycobacteriophage Che8 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18246 - 59231 88 26 -22.2 NP_817450 5' arm      3' arm
18245 - 58573 89 26 -23.9 NP_817448 5' arm      3' arm
18244 - 57526 89 23 -25.1 NP_817447 5' arm      3' arm
18243 - 57248 88 20.5 -21.7 NP_817446 5' arm      3' arm
18242 - 57131 88 20.5 -23.1 NP_817446 5' arm      3' arm
18241 - 56712 90 21 -25 NP_817446 5' arm      3' arm
18240 - 56470 88 23 -25.7 NP_817446 5' arm      3' arm
18239 - 56098 89 23.5 -26.1 NP_817445 5' arm      3' arm
18238 - 55211 90 24 -19.4 NP_817442 5' arm      3' arm
18237 - 54846 88 20.5 -21.3 NP_817440 5' arm      3' arm
18236 - 54165 89 21.5 -24.8 NP_817439 5' arm      3' arm
18235 - 53950 89 20 -26.6 NP_817438 5' arm      3' arm
18234 - 53756 87 19 -20.8 NP_817438 5' arm      3' arm
18233 - 52692 87 20 -24.54 NP_817435 5' arm      3' arm
18232 - 52564 87 26 -31.4 NP_817434 5' arm      3' arm
18231 - 52314 87 23 -20.5 NP_817433 5' arm      3' arm
18230 - 50837 89 23 -21.8 NP_817427 5' arm      3' arm
18229 - 50475 89 21.5 -19.9 NP_817425 5' arm      3' arm
18228 - 49851 89 19 -20 NP_817423 5' arm      3' arm
18227 - 49076 89 20.5 -25 NP_817421 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.