miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18418 - 24084 87 24 -23.7 NP_817476 5' arm      3' arm
18363 - 4235 85 24 -29.8 NP_817458 5' arm      3' arm
18311 + 37541 90 23.5 -25.1 NP_817500 5' arm      3' arm
18283 + 22254 87 23.5 -28.8 NP_817475 5' arm      3' arm
18403 - 19456 87 23.5 -25.5 NP_817473 5' arm      3' arm
18430 - 28714 86 23.5 -21.7 NP_817478 5' arm      3' arm
18538 - 75733 87 23.5 -23.9 5' arm      3' arm
18518 - 64407 90 23.5 -28.9 NP_817558 5' arm      3' arm
18408 - 20803 87 23.5 -21.2 NP_817474 5' arm      3' arm
18396 - 15332 88 23.5 -22.3 NP_817472 5' arm      3' arm
18508 - 59231 85 23.5 -21.1 NP_817547 5' arm      3' arm
18350 + 70546 90 23.5 -21.9 NP_817576 5' arm      3' arm
18356 + 74071 87 23.5 -22.2 NP_817587 5' arm      3' arm
18497 - 54917 87 23 -20.9 NP_817538 5' arm      3' arm
18499 - 56257 89 23 -26.9 NP_817542 5' arm      3' arm
18514 - 62595 90 23 -25.9 NP_817553 5' arm      3' arm
18422 - 25553 89 23 -35.3 NP_817477 5' arm      3' arm
18276 + 17139 86 23 -25.7 NP_817472 5' arm      3' arm
18423 - 25727 90 23 -25.5 NP_817477 5' arm      3' arm
18465 - 42755 83 23 -21 NP_817509 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.