miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18463 - 42264 90 26.5 -29.8 NP_817508 5' arm      3' arm
18315 + 43477 86 26.5 -21.4 5' arm      3' arm
18492 - 53555 88 26 -19.7 NP_817536 5' arm      3' arm
18416 - 22979 89 26 -31 NP_817475 5' arm      3' arm
18345 + 68579 90 26 -34.8 NP_817569 5' arm      3' arm
18537 - 75597 89 25.5 -21.4 5' arm      3' arm
18469 - 45249 87 25 -29.6 NP_817516 5' arm      3' arm
18440 - 33282 88 25 -20.8 NP_817485 5' arm      3' arm
18401 - 19124 86 25 -20.2 NP_817473 5' arm      3' arm
18386 - 13026 89 25 -30.5 NP_817469 5' arm      3' arm
18255 + 5659 89 24.5 -26 NP_817460 5' arm      3' arm
18452 - 39381 86 24.5 -33.8 NP_817502 5' arm      3' arm
18373 - 9101 89 24.5 -28.3 NP_817462 5' arm      3' arm
18335 + 63176 87 24.5 -35.1 NP_817555 5' arm      3' arm
18269 + 14135 88 24.5 -27.6 NP_817472 5' arm      3' arm
18418 - 24084 87 24 -23.7 NP_817476 5' arm      3' arm
18371 - 8422 90 24 -19.4 NP_817462 5' arm      3' arm
18475 - 47304 89 24 -22.7 NP_817519 5' arm      3' arm
18529 - 70724 89 24 -29.4 5' arm      3' arm
18309 + 36363 89 24 -19.91 NP_817494 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.