miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18367 - 5431 89 24 -26 NP_817460 5' arm      3' arm
18258 + 7504 89 21.5 -23.1 NP_817461 5' arm      3' arm
18370 - 7854 90 23 -27.4 NP_817461 5' arm      3' arm
18369 - 7740 89 19 -23.2 NP_817461 5' arm      3' arm
18260 + 7930 89 20 -19.4 NP_817461 5' arm      3' arm
18257 + 7000 88 19 -19.7 NP_817461 5' arm      3' arm
18259 + 7620 90 20 -21.7 NP_817461 5' arm      3' arm
18261 + 9013 89 22.5 -28.3 NP_817462 5' arm      3' arm
18262 + 9439 90 20.5 -20.2 NP_817462 5' arm      3' arm
18371 - 8422 90 24 -19.4 NP_817462 5' arm      3' arm
18374 - 9403 90 21.5 -25.2 NP_817462 5' arm      3' arm
18375 - 9490 84 22 -28.3 NP_817462 5' arm      3' arm
18373 - 9101 89 24.5 -28.3 NP_817462 5' arm      3' arm
18372 - 8852 86 19 -21.8 NP_817462 5' arm      3' arm
18377 - 10566 89 23 -24.3 NP_817465 5' arm      3' arm
18378 - 10976 85 20 -25.2 NP_817466 5' arm      3' arm
18264 + 11275 90 19 -23.8 NP_817467 5' arm      3' arm
18383 - 12395 89 21.5 -27.2 NP_817468 5' arm      3' arm
18379 - 11713 90 20 -21.7 NP_817468 5' arm      3' arm
18382 - 12189 85 19.5 -20.6 NP_817468 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.