miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18318 + 46494 89 19 -21 NP_817518 5' arm      3' arm
18310 + 36673 90 19 -22.4 NP_817496 5' arm      3' arm
18306 + 34993 89 19 -20.4 NP_817490 5' arm      3' arm
18267 + 13492 90 19 -25.9 NP_817470 5' arm      3' arm
18265 + 11592 90 19 -24.4 NP_817468 5' arm      3' arm
18264 + 11275 90 19 -23.8 NP_817467 5' arm      3' arm
18263 + 9632 86 19 -34.3 5' arm      3' arm
18338 + 64230 89 19 -24.8 NP_817558 5' arm      3' arm
18481 - 50510 90 19.5 -22.8 NP_817529 5' arm      3' arm
18302 + 33054 87 19.5 -22.5 NP_817485 5' arm      3' arm
18319 + 46773 87 19.5 -25.8 NP_817519 5' arm      3' arm
18336 + 63323 90 19.5 -35.3 NP_817555 5' arm      3' arm
18361 - 3140 90 19.5 -29.41 NP_817458 5' arm      3' arm
18425 - 27133 89 19.5 -20.7 NP_817477 5' arm      3' arm
18476 - 47882 90 19.5 -20.8 NP_817521 5' arm      3' arm
18441 - 33512 84 19.5 -20.5 NP_817486 5' arm      3' arm
18299 + 30654 90 19.5 -24.1 NP_817482 5' arm      3' arm
18453 - 39657 89 19.5 -22.1 NP_817502 5' arm      3' arm
18531 - 71140 80 19.5 -25.1 NP_817578 5' arm      3' arm
18288 + 26316 89 19.5 -25.5 NP_817477 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.