miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566108 NC_004683.1 Mycobacteriophage Che9c virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18974 - 56390 89 28.5 -36.2 NP_817760 5' arm      3' arm
18796 + 26605 90 23.5 -34.2 5' arm      3' arm
18938 - 44530 89 21 -33.8 NP_817738 5' arm      3' arm
18926 - 40872 89 21.5 -33.7 NP_817730 5' arm      3' arm
18958 - 51109 90 19.5 -33.4 NP_817749 5' arm      3' arm
18828 + 44877 90 20 -33.4 NP_817739 5' arm      3' arm
18869 - 10176 89 22 -32.4 NP_817691 5' arm      3' arm
18750 + 562 88 24 -32.3 NP_817679 5' arm      3' arm
18764 + 6893 90 21.5 -32.1 NP_817685 5' arm      3' arm
18955 - 49931 88 20.5 -31.7 NP_817747 5' arm      3' arm
18967 - 54648 89 20.5 -31.5 NP_817759 5' arm      3' arm
18787 + 20846 88 22 -31.1 NP_817698 5' arm      3' arm
18761 + 5766 89 20 -30.8 NP_817683 5' arm      3' arm
18839 + 50631 89 19.5 -30.5 NP_817749 5' arm      3' arm
18936 - 43586 90 25 -30.3 NP_817737 5' arm      3' arm
18790 + 21651 89 21 -30.2 NP_817699 5' arm      3' arm
18806 + 33975 90 21.5 -30.2 NP_817720 5' arm      3' arm
18775 + 14986 90 20.5 -30.1 NP_817693 5' arm      3' arm
18763 + 6691 90 26.5 -29.3 NP_817685 5' arm      3' arm
18932 - 42502 85 20 -29.1 NP_817735 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.