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GenBank Identifier | RefSeq Acc. | Name |
29566108 | NC_004683.1 | Mycobacteriophage Che9c virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
18974 | - | 56390 | 89 | 28.5 | -36.2 | NP_817760 | 5' arm 3' arm | ||
18796 | + | 26605 | 90 | 23.5 | -34.2 | 5' arm 3' arm | |||
18938 | - | 44530 | 89 | 21 | -33.8 | NP_817738 | 5' arm 3' arm | ||
18926 | - | 40872 | 89 | 21.5 | -33.7 | NP_817730 | 5' arm 3' arm | ||
18958 | - | 51109 | 90 | 19.5 | -33.4 | NP_817749 | 5' arm 3' arm | ||
18828 | + | 44877 | 90 | 20 | -33.4 | NP_817739 | 5' arm 3' arm | ||
18869 | - | 10176 | 89 | 22 | -32.4 | NP_817691 | 5' arm 3' arm | ||
18750 | + | 562 | 88 | 24 | -32.3 | NP_817679 | 5' arm 3' arm | ||
18764 | + | 6893 | 90 | 21.5 | -32.1 | NP_817685 | 5' arm 3' arm | ||
18955 | - | 49931 | 88 | 20.5 | -31.7 | NP_817747 | 5' arm 3' arm | ||
18967 | - | 54648 | 89 | 20.5 | -31.5 | NP_817759 | 5' arm 3' arm | ||
18787 | + | 20846 | 88 | 22 | -31.1 | NP_817698 | 5' arm 3' arm | ||
18761 | + | 5766 | 89 | 20 | -30.8 | NP_817683 | 5' arm 3' arm | ||
18839 | + | 50631 | 89 | 19.5 | -30.5 | NP_817749 | 5' arm 3' arm | ||
18936 | - | 43586 | 90 | 25 | -30.3 | NP_817737 | 5' arm 3' arm | ||
18790 | + | 21651 | 89 | 21 | -30.2 | NP_817699 | 5' arm 3' arm | ||
18806 | + | 33975 | 90 | 21.5 | -30.2 | NP_817720 | 5' arm 3' arm | ||
18775 | + | 14986 | 90 | 20.5 | -30.1 | NP_817693 | 5' arm 3' arm | ||
18763 | + | 6691 | 90 | 26.5 | -29.3 | NP_817685 | 5' arm 3' arm | ||
18932 | - | 42502 | 85 | 20 | -29.1 | NP_817735 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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