miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566193 NC_004684.1 Mycobacteriophage Rosebush virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19262 - 67294 88 19 -20.3 NP_817851 5' arm      3' arm
19261 - 67118 88 22.5 -32.2 NP_817851 5' arm      3' arm
19260 - 65353 85 19.5 -26.3 NP_817846 5' arm      3' arm
19259 - 64603 90 20 -24.5 NP_817844 5' arm      3' arm
19258 - 64370 89 20.5 -20.9 NP_817844 5' arm      3' arm
19257 - 64203 88 19 -22 NP_817844 5' arm      3' arm
19256 - 61563 90 22.5 -29.1 5' arm      3' arm
19255 - 61289 89 19 -29.5 NP_817837 5' arm      3' arm
19254 - 61191 87 22.5 -33.7 5' arm      3' arm
19253 - 60929 86 20.5 -20.2 NP_817836 5' arm      3' arm
19252 - 60626 88 21.5 -23.6 NP_817835 5' arm      3' arm
19251 - 60087 85 19.5 -25.3 NP_817833 5' arm      3' arm
19250 - 59899 90 22.5 -22.8 NP_817832 5' arm      3' arm
19249 - 59362 89 21 -34 NP_817831 5' arm      3' arm
19248 - 58315 89 23.5 -24.9 NP_817829 5' arm      3' arm
19247 - 58161 87 20.5 -21.2 NP_817829 5' arm      3' arm
19246 - 57807 88 21 -23.5 NP_817828 5' arm      3' arm
19245 - 57718 84 21.5 -25.4 NP_817828 5' arm      3' arm
19244 - 57587 88 20 -21.2 NP_817828 5' arm      3' arm
19243 - 57201 90 21 -24 NP_817827 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.