miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566284 NC_004685.1 Mycobacteriophage Corndog virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19553 - 69570 90 21.5 -20.1 NP_817973 5' arm      3' arm
19552 - 69210 83 21 -24.1 NP_817973 5' arm      3' arm
19551 - 69074 86 20.5 -24.3 NP_817973 5' arm      3' arm
19550 - 68290 87 24.5 -21 NP_817972 5' arm      3' arm
19549 - 67104 89 20.5 -30.9 NP_817969 5' arm      3' arm
19548 - 66932 90 21.5 -28.5 NP_817969 5' arm      3' arm
19547 - 66504 88 19 -20.4 NP_817968 5' arm      3' arm
19546 - 66329 86 21.5 -20.9 NP_817967 5' arm      3' arm
19545 - 65465 88 23 -35.6 NP_817962 5' arm      3' arm
19544 - 65335 87 20.5 -23.1 NP_817962 5' arm      3' arm
19543 - 63954 89 21.5 -20.8 NP_817958 5' arm      3' arm
19542 - 63779 90 28.5 -34 NP_817957 5' arm      3' arm
19541 - 63229 88 20.5 -25.7 5' arm      3' arm
19540 - 62619 88 20.5 -22 5' arm      3' arm
19539 - 62471 90 20 -21.9 NP_817953 5' arm      3' arm
19538 - 61790 89 21 -22.4 NP_817951 5' arm      3' arm
19537 - 61426 87 21 -27.1 NP_817950 5' arm      3' arm
19536 - 61090 85 21 -25.5 NP_817949 5' arm      3' arm
19535 - 60375 89 19 -23.2 NP_817948 5' arm      3' arm
19534 - 60249 78 19.5 -21.1 NP_817948 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.