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| GenBank Identifier | RefSeq Acc. | Name |
| 29566407 | NC_004686.1 | Mycobacteriophage Che9d virion |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 19683 | - | 30164 | 90 | 23 | -26.1 | NP_818017 | 5' arm 3' arm | ||
| 19626 | + | 44396 | 88 | 20 | -26.1 | NP_818049 | 5' arm 3' arm | ||
| 19707 | - | 44966 | 89 | 22.5 | -26.1 | NP_818052 | 5' arm 3' arm | ||
| 19725 | - | 53601 | 89 | 26 | -25.9 | NP_818073 | 5' arm 3' arm | ||
| 19599 | + | 25825 | 90 | 21 | -25.8 | NP_818008 | 5' arm 3' arm | ||
| 19579 | + | 14040 | 90 | 23 | -25.8 | NP_817992 | 5' arm 3' arm | ||
| 19560 | + | 3257 | 90 | 20.5 | -25.8 | NP_817977 | 5' arm 3' arm | ||
| 19643 | - | 5888 | 79 | 21 | -25.72 | NP_817981 | 5' arm 3' arm | ||
| 19635 | + | 49317 | 88 | 19 | -25.7 | NP_818065 | 5' arm 3' arm | ||
| 19670 | - | 22791 | 90 | 20.5 | -25.7 | NP_817999 | 5' arm 3' arm | ||
| 19641 | - | 5126 | 89 | 21 | -25.7 | NP_817980 | 5' arm 3' arm | ||
| 19616 | + | 38890 | 87 | 21 | -25.6 | NP_818038 | 5' arm 3' arm | ||
| 19710 | - | 46651 | 90 | 22.5 | -25.6 | NP_818058 | 5' arm 3' arm | ||
| 19663 | - | 16033 | 89 | 20.5 | -25.52 | NP_817994 | 5' arm 3' arm | ||
| 19703 | - | 43388 | 90 | 19 | -25.3 | NP_818049 | 5' arm 3' arm | ||
| 19614 | + | 38045 | 90 | 21.5 | -25.2 | NP_818035 | 5' arm 3' arm | ||
| 19596 | + | 23983 | 88 | 22 | -25.2 | NP_818001 | 5' arm 3' arm | ||
| 19628 | + | 45905 | 88 | 21 | -25.2 | NP_818055 | 5' arm 3' arm | ||
| 19627 | + | 45404 | 88 | 19.5 | -25.1 | NP_818053 | 5' arm 3' arm | ||
| 19693 | - | 37532 | 90 | 19 | -25.1 | NP_818033 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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