miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566407 NC_004686.1 Mycobacteriophage Che9d virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19697 - 39760 90 23 -28.3 NP_818040 5' arm      3' arm
19695 - 38947 87 20.5 -28.1 NP_818038 5' arm      3' arm
19613 + 35528 90 26 -28 NP_818027 5' arm      3' arm
19650 - 8965 87 19.5 -27.9 NP_817988 5' arm      3' arm
19681 - 27834 88 21 -27.7 NP_818009 5' arm      3' arm
19620 + 40154 89 20 -27.4 NP_818041 5' arm      3' arm
19594 + 22363 87 19.5 -27.3 NP_817998 5' arm      3' arm
19574 + 11645 87 22.5 -27.3 NP_817990 5' arm      3' arm
19566 + 8418 90 20 -27.2 NP_817988 5' arm      3' arm
19730 - 55498 90 24 -27.1 NP_818075 5' arm      3' arm
19662 - 14801 87 21 -27.1 NP_817992 5' arm      3' arm
19611 + 35144 90 20.5 -27 NP_818027 5' arm      3' arm
19554 + 122 89 23 -26.9 NP_817974 5' arm      3' arm
19557 + 2361 86 22 -26.7 NP_817977 5' arm      3' arm
19706 - 44105 86 21.5 -26.6 NP_818050 5' arm      3' arm
19632 + 48065 85 24 -26.5 NP_818061 5' arm      3' arm
19629 + 46079 90 21 -26.4 NP_818056 5' arm      3' arm
19639 + 51127 90 20.5 -26.3 NP_955481 5' arm      3' arm
19644 - 7216 90 21 -26.2 NP_817985 5' arm      3' arm
19683 - 30164 90 23 -26.1 NP_818017 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.