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| GenBank Identifier | RefSeq Acc. | Name |
| 29566407 | NC_004686.1 | Mycobacteriophage Che9d virion |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 19564 | + | 6969 | 90 | 19 | -23.8 | NP_817985 | 5' arm 3' arm | ||
| 19565 | + | 7100 | 89 | 20.5 | -35.4 | NP_817985 | 5' arm 3' arm | ||
| 19644 | - | 7216 | 90 | 21 | -26.2 | NP_817985 | 5' arm 3' arm | ||
| 19645 | - | 7403 | 90 | 21.5 | -22.9 | NP_817986 | 5' arm 3' arm | ||
| 19646 | - | 7619 | 90 | 23.5 | -36 | NP_817986 | 5' arm 3' arm | ||
| 19647 | - | 7970 | 90 | 21.5 | -20.8 | NP_817987 | 5' arm 3' arm | ||
| 19567 | + | 8750 | 88 | 21.5 | -23.7 | NP_817988 | 5' arm 3' arm | ||
| 19566 | + | 8418 | 90 | 20 | -27.2 | NP_817988 | 5' arm 3' arm | ||
| 19568 | + | 8840 | 90 | 19.5 | -28.4 | NP_817988 | 5' arm 3' arm | ||
| 19650 | - | 8965 | 87 | 19.5 | -27.9 | NP_817988 | 5' arm 3' arm | ||
| 19649 | - | 8831 | 90 | 19.5 | -21.5 | NP_817988 | 5' arm 3' arm | ||
| 19648 | - | 8370 | 88 | 26 | -34.3 | NP_817988 | 5' arm 3' arm | ||
| 19651 | - | 9193 | 89 | 21 | -30.5 | NP_817989 | 5' arm 3' arm | ||
| 19653 | - | 11308 | 88 | 22 | -31.7 | NP_817990 | 5' arm 3' arm | ||
| 19574 | + | 11645 | 87 | 22.5 | -27.3 | NP_817990 | 5' arm 3' arm | ||
| 19569 | + | 9293 | 88 | 22 | -22.1 | NP_817990 | 5' arm 3' arm | ||
| 19575 | + | 12299 | 89 | 21 | -20.3 | NP_817990 | 5' arm 3' arm | ||
| 19573 | + | 11136 | 90 | 24.5 | -32 | NP_817990 | 5' arm 3' arm | ||
| 19655 | - | 11837 | 90 | 20 | -24.5 | NP_817990 | 5' arm 3' arm | ||
| 19570 | + | 9956 | 83 | 19.5 | -19.9 | NP_817990 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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