miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566407 NC_004686.1 Mycobacteriophage Che9d virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19580 + 15032 90 19.5 -21 NP_817992 5' arm      3' arm
19634 + 49079 89 19.5 -23.8 NP_818065 5' arm      3' arm
19649 - 8831 90 19.5 -21.5 NP_817988 5' arm      3' arm
19570 + 9956 83 19.5 -19.9 NP_817990 5' arm      3' arm
19713 - 49297 87 19.5 -21.2 NP_818065 5' arm      3' arm
19627 + 45404 88 19.5 -25.1 NP_818053 5' arm      3' arm
19568 + 8840 90 19.5 -28.4 NP_817988 5' arm      3' arm
19594 + 22363 87 19.5 -27.3 NP_817998 5' arm      3' arm
19676 - 25630 84 19.5 -20.5 NP_818008 5' arm      3' arm
19661 - 14667 89 19.5 -20.9 NP_817992 5' arm      3' arm
19717 - 50529 90 19.5 -20 5' arm      3' arm
19650 - 8965 87 19.5 -27.9 NP_817988 5' arm      3' arm
19626 + 44396 88 20 -26.1 NP_818049 5' arm      3' arm
19672 - 24516 90 20 -24.9 NP_818002 5' arm      3' arm
19577 + 13309 90 20 -21.4 NP_817991 5' arm      3' arm
19598 + 25585 88 20 -19.8 NP_818008 5' arm      3' arm
19680 - 26660 86 20 -21.1 NP_818008 5' arm      3' arm
19566 + 8418 90 20 -27.2 NP_817988 5' arm      3' arm
19714 - 49405 90 20 -22.1 NP_818065 5' arm      3' arm
19589 + 19927 87 20 -21.89 NP_817998 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.