miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566407 NC_004686.1 Mycobacteriophage Che9d virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19625 + 43748 90 23.5 -32.7 NP_818049 5' arm      3' arm
19722 - 52168 89 23.5 -34.9 NP_955484 5' arm      3' arm
19726 - 54166 89 23.5 -22.4 NP_818074 5' arm      3' arm
19590 + 20422 90 23.5 -23.8 NP_817998 5' arm      3' arm
19593 + 21898 87 23.5 -20.4 NP_817998 5' arm      3' arm
19646 - 7619 90 23.5 -36 NP_817986 5' arm      3' arm
19605 + 28847 86 23.5 -20.3 NP_818013 5' arm      3' arm
19642 - 5343 89 23 -20.8 NP_817980 5' arm      3' arm
19554 + 122 89 23 -26.9 NP_817974 5' arm      3' arm
19708 - 45844 89 23 -20.3 NP_818054 5' arm      3' arm
19652 - 9890 88 23 -31.5 NP_817990 5' arm      3' arm
19697 - 39760 90 23 -28.3 NP_818040 5' arm      3' arm
19582 + 15536 90 23 -29.1 NP_817993 5' arm      3' arm
19579 + 14040 90 23 -25.8 NP_817992 5' arm      3' arm
19689 - 31990 86 23 -22.5 NP_818023 5' arm      3' arm
19691 - 34612 90 23 -20.2 NP_818026 5' arm      3' arm
19669 - 22604 90 23 -21.1 NP_817999 5' arm      3' arm
19683 - 30164 90 23 -26.1 NP_818017 5' arm      3' arm
19718 - 50679 84 22.5 -21.8 NP_955479 5' arm      3' arm
19586 + 17817 88 22.5 -23.4 NP_817997 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.