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| GenBank Identifier | RefSeq Acc. | Name |
| 29566407 | NC_004686.1 | Mycobacteriophage Che9d virion |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 19715 | - | 50023 | 88 | 20.5 | -22 | NP_818068 | 5' arm 3' arm | ||
| 19636 | + | 49804 | 85 | 19 | -23.2 | NP_818067 | 5' arm 3' arm | ||
| 19634 | + | 49079 | 89 | 19.5 | -23.8 | NP_818065 | 5' arm 3' arm | ||
| 19714 | - | 49405 | 90 | 20 | -22.1 | NP_818065 | 5' arm 3' arm | ||
| 19713 | - | 49297 | 87 | 19.5 | -21.2 | NP_818065 | 5' arm 3' arm | ||
| 19635 | + | 49317 | 88 | 19 | -25.7 | NP_818065 | 5' arm 3' arm | ||
| 19633 | + | 48928 | 90 | 19.5 | -23.9 | NP_818064 | 5' arm 3' arm | ||
| 19632 | + | 48065 | 85 | 24 | -26.5 | NP_818061 | 5' arm 3' arm | ||
| 19630 | + | 47494 | 90 | 22 | -21.6 | NP_818059 | 5' arm 3' arm | ||
| 19712 | - | 47450 | 90 | 20 | -23.8 | NP_818059 | 5' arm 3' arm | ||
| 19631 | + | 47606 | 89 | 24.5 | -20.9 | NP_818059 | 5' arm 3' arm | ||
| 19711 | - | 46846 | 89 | 19 | -22.9 | NP_818058 | 5' arm 3' arm | ||
| 19710 | - | 46651 | 90 | 22.5 | -25.6 | NP_818058 | 5' arm 3' arm | ||
| 19629 | + | 46079 | 90 | 21 | -26.4 | NP_818056 | 5' arm 3' arm | ||
| 19628 | + | 45905 | 88 | 21 | -25.2 | NP_818055 | 5' arm 3' arm | ||
| 19708 | - | 45844 | 89 | 23 | -20.3 | NP_818054 | 5' arm 3' arm | ||
| 19627 | + | 45404 | 88 | 19.5 | -25.1 | NP_818053 | 5' arm 3' arm | ||
| 19707 | - | 44966 | 89 | 22.5 | -26.1 | NP_818052 | 5' arm 3' arm | ||
| 19706 | - | 44105 | 86 | 21.5 | -26.6 | NP_818050 | 5' arm 3' arm | ||
| 19624 | + | 43429 | 87 | 20 | -19.5 | NP_818049 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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