miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566511 NC_004687.1 Mycobacteriophage Bxz1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20169 - 70002 88 29.5 -33.82 NP_818197 5' arm      3' arm
20137 - 60523 87 29.5 -34.1 NP_818185 5' arm      3' arm
20354 - 140293 84 27 -22.9 NP_818282 5' arm      3' arm
19988 - 10410 87 26.5 -31 NP_818105 5' arm      3' arm
19856 + 94895 90 26.5 -31.7 NP_818226 5' arm      3' arm
20147 - 64023 88 26.5 -21.9 NP_818190 5' arm      3' arm
20402 - 155044 90 26 -32.3 NP_818300 5' arm      3' arm
20014 - 17425 90 26 -31.4 NP_818128 5' arm      3' arm
19870 + 103657 88 26 -28.7 5' arm      3' arm
19767 + 39928 90 26 -28.5 NP_818162 5' arm      3' arm
20044 - 26319 89 25.5 -33.1 NP_818148 5' arm      3' arm
20017 - 18514 90 25.5 -33 NP_818131 5' arm      3' arm
20085 - 44691 90 25.5 -22.6 NP_818167 5' arm      3' arm
20350 - 139621 90 25.5 -24.8 NP_818282 5' arm      3' arm
20146 - 63562 88 25.5 -20.3 NP_818189 5' arm      3' arm
20344 - 138259 86 25 -30.8 NP_818282 5' arm      3' arm
20380 - 147736 88 25 -20.7 NP_818289 5' arm      3' arm
19962 - 1698 89 25 -26.1 NP_818081 5' arm      3' arm
20063 - 35714 87 25 -25.7 NP_818160 5' arm      3' arm
20187 - 75371 90 25 -21.7 NP_818202 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.