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GenBank Identifier | RefSeq Acc. | Name |
29566975 | NC_004689.1 | Mycobacteriophage Barnyard virion |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
20760 | + | 2165 | 87 | 19 | -23.6 | NP_818542 | 5' arm 3' arm | ||
20761 | + | 4561 | 89 | 20 | -21.5 | NP_818545 | 5' arm 3' arm | ||
20762 | + | 5915 | 90 | 21 | -21.21 | NP_818545 | 5' arm 3' arm | ||
20763 | + | 6715 | 89 | 23 | -21.4 | NP_818549 | 5' arm 3' arm | ||
20764 | + | 8007 | 89 | 20 | -21.5 | NP_818553 | 5' arm 3' arm | ||
20765 | + | 11831 | 90 | 21 | -27 | NP_818559 | 5' arm 3' arm | ||
20766 | + | 12060 | 90 | 19.5 | -24.4 | NP_818559 | 5' arm 3' arm | ||
20767 | + | 12935 | 87 | 23 | -29.9 | NP_818559 | 5' arm 3' arm | ||
20768 | + | 14040 | 89 | 21 | -22.6 | NP_818561 | 5' arm 3' arm | ||
20769 | + | 16286 | 89 | 19 | -20 | NP_818568 | 5' arm 3' arm | ||
20770 | + | 16500 | 75 | 20 | -24 | NP_818568 | 5' arm 3' arm | ||
20771 | + | 17352 | 89 | 19.5 | -22.4 | NP_818569 | 5' arm 3' arm | ||
20772 | + | 17555 | 77 | 19.5 | -25.5 | NP_818569 | 5' arm 3' arm | ||
20773 | + | 18325 | 90 | 19.5 | -22.8 | NP_818571 | 5' arm 3' arm | ||
20774 | + | 19012 | 89 | 23 | -22.4 | NP_818571 | 5' arm 3' arm | ||
20775 | + | 19468 | 90 | 20 | -27.4 | NP_818571 | 5' arm 3' arm | ||
20776 | + | 19886 | 87 | 22.5 | -21.3 | NP_818571 | 5' arm 3' arm | ||
20777 | + | 19986 | 88 | 21 | -28.2 | 5' arm 3' arm | |||
20778 | + | 20167 | 90 | 21 | -22.9 | NP_818571 | 5' arm 3' arm | ||
20779 | + | 20424 | 87 | 19 | -26.5 | NP_818571 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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