miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566975 NC_004689.1 Mycobacteriophage Barnyard virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20760 + 2165 87 19 -23.6 NP_818542 5' arm      3' arm
20761 + 4561 89 20 -21.5 NP_818545 5' arm      3' arm
20762 + 5915 90 21 -21.21 NP_818545 5' arm      3' arm
20763 + 6715 89 23 -21.4 NP_818549 5' arm      3' arm
20764 + 8007 89 20 -21.5 NP_818553 5' arm      3' arm
20765 + 11831 90 21 -27 NP_818559 5' arm      3' arm
20766 + 12060 90 19.5 -24.4 NP_818559 5' arm      3' arm
20767 + 12935 87 23 -29.9 NP_818559 5' arm      3' arm
20768 + 14040 89 21 -22.6 NP_818561 5' arm      3' arm
20769 + 16286 89 19 -20 NP_818568 5' arm      3' arm
20770 + 16500 75 20 -24 NP_818568 5' arm      3' arm
20771 + 17352 89 19.5 -22.4 NP_818569 5' arm      3' arm
20772 + 17555 77 19.5 -25.5 NP_818569 5' arm      3' arm
20773 + 18325 90 19.5 -22.8 NP_818571 5' arm      3' arm
20774 + 19012 89 23 -22.4 NP_818571 5' arm      3' arm
20775 + 19468 90 20 -27.4 NP_818571 5' arm      3' arm
20776 + 19886 87 22.5 -21.3 NP_818571 5' arm      3' arm
20777 + 19986 88 21 -28.2 5' arm      3' arm
20778 + 20167 90 21 -22.9 NP_818571 5' arm      3' arm
20779 + 20424 87 19 -26.5 NP_818571 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.