miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
20805	+	37452	89	28.5	-28.9			5' arm      3' arm
20834	-	311	89	27.5	-23.5	NP_818539		5' arm      3' arm
20889	-	42455	88	26	-25.9	NP_818596		5' arm      3' arm
20918	-	69066	90	26	-28.3	NP_818646		5' arm      3' arm
20800	+	36408	88	26	-24.8	NP_818585		5' arm      3' arm
20894	-	49108	87	25.5	-29.8			5' arm      3' arm
20885	-	41324	90	25.5	-29.3	NP_818594		5' arm      3' arm
20860	-	17031	89	25.5	-28.2	NP_818568		5' arm      3' arm
20827	+	61948	90	24.5	-22.6	NP_818628		5' arm      3' arm
20841	-	11128	90	24.5	-31.4	NP_818557		3' arm
20783	+	22212	83	24	-27.4	NP_818571		5' arm      3' arm
20825	+	60573	90	24	-35.7	NP_818625		5' arm      3' arm
20887	-	41932	87	24	-28.3	NP_818594		5' arm      3' arm
20888	-	42028	89	24	-35.5			5' arm      3' arm
20883	-	40869	90	23	-20.8	NP_818594		5' arm      3' arm
20767	+	12935	87	23	-29.9	NP_818559		5' arm      3' arm
20763	+	6715	89	23	-21.4	NP_818549		5' arm      3' arm
20880	-	38075	88	23	-25.9	NP_818587		5' arm      3' arm
20810	+	39333	87	23	-23	NP_818591		5' arm      3' arm
20879	-	37581	90	23	-20.4			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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